1. Xuan J, Chen L, Chen Z, Pang J, Huang J, Lin J, Zheng L, Li B, Qu L, Yang J. RMBase v3.0: decode the landscape, mechanisms and functions of RNA modifications. Nucleic Acids Res. 2024 Jan 5;52(D1):D273-D284. doi: 10.1093/nar/gkad1070.
2. Xuan JJ, Sun WJ, Lin PH, Zhou KR, Liu S, Zheng LL, Qu LH, Yang JH. RMBase v2.0: deciphering the map of RNA modifications from epitranscriptome sequencing data. Nucleic Acids Res. 2018 Jan 4;46(D1):D327-D334. doi: 10.1093/nar/gkx934.
3. Cai L, Xuan J, Lin Q, Wang J, Liu S, Xie F, Zheng L, Li B, Qu L, Yang J. Pol3Base: a resource for decoding the interactome, expression, evolution, epitranscriptome and disease variations of Pol III-transcribed ncRNAs. Nucleic Acids Res. 2022 Jan 7;50(D1):D279-D286. doi: 10.1093/nar/gkab1033.
4. Xie F, Liu S, Wang J, Xuan J, Zhang X, Qu L, Zheng L, Yang J. deepBase v3.0: expression atlas and interactive analysis of ncRNAs from thousands of deep-sequencing data. Nucleic Acids Res. 2021 Jan 8;49(D1):D877-D883. doi: 10.1093/nar/gkaa1039.
5. Huang J, Zheng W, Zhang P, Lin Q, Chen Z, Xuan J, Liu C, Wu D, Huang Q, Zheng L, Liu S, Zhou K, Qu L, Li B, Yang J. ChIPBase v3.0: the encyclopedia of transcriptional regulations of non-coding RNAs and protein-coding genes. Nucleic Acids Res. 2023 Jan 6;51(D1):D46-D56. doi: 10.1093/nar/gkac1067.
6. Xu W, Liu C, Deng B, Lin P, Sun Z, Liu A, Xuan J, Li Y, Zhou K, Zhang X, Huang Q, Zhou H, He Q, Li B, Qu L, Yang J. TP53-inducible putative long noncoding RNAs encode functional polypeptides that suppress cell proliferation. Genome Res. 2022 Jun;32(6):1026-1041. doi: 10.1101/gr.275831.121. Epub 2022 May 24.